Package: arb Description-md5: 2ca2c66185345d1b949d56621a7ef415 Description-en: phylogenetic sequence analysis suite - main program ARB is a graphical suite of tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the sequence entries is structured according to phylogeny or other user-defined criteria. . The ARB project (from the Latin "arbor", a tree) is a joint initiative of the Lehrstuhl für Mikrobiologie and the LRR of the Technische Universität München in 1992. Since 2014 the ARB project is continued by the Department of Molecular Ecology http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html at the Max Planck Institute for Marine Microbiology in Bremen in cooperation with Ribocon GmbH http://www.ribocon.com . Package: arb-common Description-md5: 86aeba2447b7f1108f14f73c8e61d746 Description-en: phylogenetic sequence analysis suite - common files ARB is a graphical suite of tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the sequence entries is structured according to phylogeny or other user-defined criteria. . The ARB project (from the Latin "arbor", a tree) is a joint initiative of the Lehrstuhl für Mikrobiologie and the LRR of the Technische Universität München in 1992. Since 2014 the ARB project is continued by the Department of Molecular Ecology http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html at the Max Planck Institute for Marine Microbiology in Bremen in cooperation with Ribocon GmbH http://www.ribocon.com . . This package provides the architecture independent scripts of ARB. Package: arb-doc Description-md5: 938bcc4350a34257692df7cb34295020 Description-en: phylogenetic sequence analysis suite - documentation ARB is a graphical suite of tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the sequence entries is structured according to phylogeny or other user-defined criteria. . The ARB project (from the Latin "arbor", a tree) is a joint initiative of the Lehrstuhl für Mikrobiologie and the LRR of the Technische Universität München in 1992. Since 2014 the ARB project is continued by the Department of Molecular Ecology http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html at the Max Planck Institute for Marine Microbiology in Bremen in cooperation with Ribocon GmbH http://www.ribocon.com . . This package provides the documentation for ARB. Package: bart-cuda Description-md5: e45b2047d3b3de23995919c1dfefbcb5 Description-en: tools for computational magnetic resonance imaging The Berkeley Advanced Reconstruction Toolbox (BART) is a free and open-source image-reconstruction framework for Computational Magnetic Resonance Imaging. It consists of a programming library and a toolbox of command-line programs. The library provides common operations on multi-dimensional arrays, Fourier and wavelet transforms, as well as generic implementations of iterative optimization algorithms. The command-line tools provide direct access to basic operations on multi-dimensional arrays as well as efficient implementations of many calibration and reconstruction algorithms for parallel imaging, compressed sensing, and machine learning. . This package provides BART with CUDA support. Package: brain2mesh-demos Description-md5: e9f024807779a12817de357606f053ea Description-en: sample files and demo scripts for Brain2Mesh This package contains sample JNIfTI sample data and meshing script to demonstrate the basic functionalities of the Brain2Mesh Toolbox. Package: cufflinks Description-md5: c37740a8cd1091b60d5fda1e37d84380 Description-en: Transcript assembly, differential expression and regulation for RNA-Seq Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one. . This package provides the binary of cufflinks and associated tools, i.e. compress_gtf, cuffcompare, cuffdiff, cuffmerge, cuffnorm, cuffquant and gtf_to_sam. Package: fonts-xfree86-nonfree Description-md5: 5c1ce64b956c2509c0a47d6940037815 Description-en: non-free TrueType fonts from XFree86 Collection of TrueType fonts originally part of the XFree86 distribution, but which are licensed under terms incompatible with the Debian Free Software Guidelines, and thus cannot be distributed as part of Debian. . The fonts are: - B&H Luxi Mono - B&H Luxi Sans - B&H Luxi Serif . Postscript Type 1 fonts are in the separate package t1-xfree86-nonfree. Package: fonts-xfree86-nonfree-syriac Description-md5: e98abee04fef67381acee16f1bc5315e Description-en: non-free syriac OpenType fonts from XFree86 Meltho mollection of syriac OpenType fonts originally part of the XFree86 distribution, but which are licensed under terms incompatible with the Debian Free Software Guidelines, and thus cannot be distributed as part of Debian. . The fonts are: - Beth Mardutho East Syriac Adiabene - Beth Mardutho East Syriac Ctesiphon - Beth Mardutho Estrangelo Antioch - Beth Mardutho Estrangelo Edessa - Beth Mardutho Estrangelo Midyat - Beth Mardutho Estrangelo Nisibin - Beth Mardutho Estrangelo Nisibin Outline - Beth Mardutho Estrangelo Quenneshrin - Beth Mardutho Estrangelo Talada - Beth Mardutho Estrangelo TurAbdin - Beth Mardutho Serto Batnan - Beth Mardutho Serto Jerusalem - Beth Mardutho Serto Jerusalem Outline - Beth Mardutho Serto Kharput - Beth Mardutho Serto Malankara - Beth Mardutho Serto Mardin - Beth Mardutho Serto Urhoy Package: ifeffit Description-md5: 910f116c8e14fa8d361b031b45896347 Description-en: Interactive XAFS analysis program IFEFFIT is an interactive program for XAFS analysis. It combines the high-quality analysis algorithms of AUTOBK and FEFFIT with graphical display of XAFS data and general data manipulation. . IFEFFIT comes as a command-line program, but the underlying functionality is available as a programming library. The IFEFFIT library can be used from C, Fortran, Tcl, and Perl. Package: ifeffit-doc Description-md5: 23588aa725d1361238e782379bbed9bc Description-en: IFEFFIT examples and documentation This package contains all the available documentation for IFEFFIT and its component programs. Example files for EXAFS data analysis are also provided as tutorials. Package: iso2mesh-demos Description-md5: 90b91382c05547d48c75972da0d46964 Description-en: sample files and demo scripts for Iso2Mesh toolbox This package contains sample meshing script and data files for testing and showcasing Iso2Mesh functions. The main functions demonstrated in this package include surface-based mesh generation via s2m/surf2mesh, volume-based mesh generation via v2m/vol2mesh, mesh smoothing (sms), boolean operations (surfboolean), downsampling (meshsample) and remeshing (remeshsurf). Package: iso2mesh-tools Description-md5: 3b89ffbe6b8b0aee8bbafebce5518870 Description-en: 3D mesh generation and repairing utilities This package contains 3D mesh generation and repairing tools that can be used independently and invoked inside iso2mesh. . These tools include cgalmesh (3D mesh generation from volumetric images), `cgalpoly` (3D mesh generation from polyhedral surfaces), `cgalsimp2` (triangular surface simplification), `meshfix` (3D surface cleaning and repairing), and `jmeshlib` (3D surface cleaning). Package: libarb Description-md5: 100ea6653bad75c8393b30e8c5a69ea4 Description-en: phylogenetic sequence analysis suite - libraries ARB is a graphical suite of tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the sequence entries is structured according to phylogeny or other user-defined criteria. . The ARB project (from the Latin "arbor", a tree) is a joint initiative of the Lehrstuhl für Mikrobiologie and the LRR of the Technische Universität München in 1992. Since 2014 the ARB project is continued by the Department of Molecular Ecology http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html at the Max Planck Institute for Marine Microbiology in Bremen in cooperation with Ribocon GmbH http://www.ribocon.com . . This package provides the dynamic libraries which are used by ARB. Package: libarb-dev Description-md5: f0f0a9bdd3c458c4732265d1b07b6847 Description-en: phylogenetic sequence analysis suite - development files ARB is a graphical suite of tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the sequence entries is structured according to phylogeny or other user-defined criteria. . The ARB project (from the Latin "arbor", a tree) is a joint initiative of the Lehrstuhl für Mikrobiologie and the LRR of the Technische Universität München in 1992. Since 2014 the ARB project is continued by the Department of Molecular Ecology http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html at the Max Planck Institute for Marine Microbiology in Bremen in cooperation with Ribocon GmbH http://www.ribocon.com . . This package provides headers and static libs needed to link against libARBDB. Package: libhwloc-contrib-plugins Description-md5: 8faa39a7d59c7d7004fdfd6792577295 Description-en: Hierarchical view of the machine - contrib plugins libhwloc provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures. It primarily aims at helping high-performance computing applications with gathering information about the hardware so as to exploit it accordingly and efficiently. . libhwloc provides a hierarchical view of the machine, NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various attributes such as cache and memory information. . libhwloc supports old kernels not having sysfs topology information, with knowledge of cpusets, offline cpus, and Kerrighed support . This package contains plugins to add discovery support for non-free items. This includes - CUDA support. Package: libifeffit-perl Description-md5: e6edcbfcf9214ca2748ec5d9024356e5 Description-en: Perl extensions for IFEFFIT IFEFFIT is an interactive program for XAFS analysis. It combines the high-quality analysis algorithms of AUTOBK and FEFFIT with graphical display of XAFS data and general data manipulation. . This package provides an interface to IFEFFIT from Perl. Package: matlab-brain2mesh Description-md5: 82b8489a4a2c45cf9c48276e4b0ddc1e Description-en: automated brain tetrahedral mesh generation toolbox for MATLAB Brain2Mesh is a fully automated 3D multi-layered brain mesh generator that supports both MATLAB and Octave. This package provides the toolbox for MATLAB. It requires the Image Processing Toolbox of MATLAB. Package: matlab-iso2mesh Description-md5: 70c13d5376ac1a8d098638a8deed9e4e Description-en: 3D surface and volumetric mesh generator for MATLAB Iso2Mesh is a MATLAB/Octave-based mesh generation toolbox, designed for easy creation of high quality surface and tetrahedral meshes from 3D volumetric images. It contains a rich set of mesh processing scripts/programs, working either independently or interacting with external free meshing utilities. Iso2Mesh toolbox can directly convert a 3D image stack, including binary, segmented or gray-scale images such as MRI or CT scans, into quality volumetric meshes. This makes it particularly suitable for multi-modality medical imaging data analysis and multi-physics modeling. Iso2Mesh is cross-platform and is compatible with both MATLAB and GNU Octave. . This package contains the MATLAB support for iso2mesh. Package: matlab-jnifti Description-md5: 24850eb9e0467dbd688e49089a9e2803 Description-en: fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter for MATLAB The JNIfTI toolbox includes a stand-alone NIfTI-1/2 parser that works on both MATLAB and GNU Octave without needing additional components. To just reading and writing the un-compressed NIfTI and Analyze7.5 files (.nii, .hdr/.img), one only needs to run addpath('/path/to/jnifti'). For MATLAB, JNIfTI toolbox utilizes memmapfile-based disk-reading, making it very fast. For Octave, memmapfile is currently not implemented, so, a full reading is required. . The JNIfTI toolbox is also capable of reading/writing gzip-compressed NIfTI and Analyze7.5 files (.nii.gz, .hdr.gz, .img.gz). This feature is supported in MATLAB directly without needing another toolbox (MATLAB must be in the JVM-enabled mode). . To process gzip-compressed NIfTI/Analyze files in Octave and MATLAB with -nojvm, one need to install the open-source JSONLab and ZMat toolboxes Package: matlab-jsonlab Description-md5: 2aeaa0d5e0504122421ec9a78a14a1a6 Description-en: native JSON/UBJSON/MassagePack encoder/decoder for MATLAB JSONLab is a free and open-source implementation of a JSON/UBJSON/MessagePack encoder and a decoder in the native MATLAB language. It can be used to convert a MATLAB data structure (array, struct, cell, struct array and cell array) into JSON/UBJSON formatted string, or decode a JSON/UBJSON/MessagePack file into MATLAB data. JSONLab supports both MATLAB and GNU Octave (a free MATLAB clone). JSONLab is now the official reference implementation for the JData Specification (Draft 3) - the foundation of the OpenJData Project (http://openjdata.org). . This package provides support for MATLAB. Package: octave-brain2mesh Description-md5: 63af1c41e2154d307ea77a403e3ba7f9 Description-en: automated brain tetrahedral mesh generation toolbox for Octave The Brain2Mesh toolbox provides a streamlined matlab function to convert a segmented brain volumes and surfaces into a high-quality multi-layered tetrahedral brain/full head mesh. Typical inputs include segmentation outputs from SPM, FreeSurfer, FSL etc. This tool does not handle the segmentation of MRI scans, but examples of how commonly encountered segmented datasets can be used to create meshes can be found in the package named brain2mesh-demos. Package: octave-iso2mesh Description-md5: ce676342413ec36338c3beea8b44f3e9 Description-en: 3D surface and volumetric mesh generator for Octave Iso2Mesh is a MATLAB/Octave-based mesh generation toolbox, designed for easy creation of high quality surface and tetrahedral meshes from 3D volumetric images. It contains a rich set of mesh processing scripts/programs, working either independently or interacting with external free meshing utilities. Iso2Mesh toolbox can directly convert a 3D image stack, including binary, segmented or gray-scale images such as MRI or CT scans, into quality volumetric meshes. This makes it particularly suitable for multi-modality medical imaging data analysis and multi-physics modeling. Iso2Mesh is cross-platform and is compatible with both MATLAB and GNU Octave. . This package contains the Octave support for iso2mesh. Package: octave-jnifti Description-md5: af5a7cdee58d2facd39837138556d1d6 Description-en: fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter This is a fully functional NIfTI-1/2 reader/writer that supports both MATLAB and GNU Octave, and is capable of reading/writing both non-compressed and compressed NIfTI files (.nii, .nii.gz) as well as two-part Analyze7.5/NIfTI files. . More importantly, this is a toolbox that converts NIfTI data to its JSON-based replacement, JNIfTI (.jnii for text-based and .bnii for binary-based), defined by the JNIfTI specification http://github.com/fangq/jnifti. JNIfTI is a much more flexible, human-readable and extensible file format compared to the more rigid and opaque NIfTI format, making the data much easier to manipulate and share. Package: ooohg Description-md5: a80f5017d973edb72a5635df82b527cb Description-en: Set of 1600 free of charge maps for libreoffice/openoffice.org Ooo.hg provides a wide set of free maps, to create easily any document for History and geography teachers, although it may also be used by other people. Package: openrct2-objects Description-md5: f6bc7e007707cf7a1dba4734f5d1ca70 Description-en: Object definitions for OpenRCT2 This package contains object definitions and translations for RollerCoaster Tycoon and RollerCoaster Tycoon 2 (requires the original game files; not included with this package). Package: openrct2-title-sequences Description-md5: 2950e021be87789c2f6f89fcc1915f8c Description-en: Title sequences for OpenRCT2 This package contains the custom title sequence for OpenRCT2, along with metadata to select the original title sequences that shipped with RollerCoaster Tycoon and RollerCoaster Tycoon 2 (requires the original game files; not included with this package). Package: opentyrian Description-md5: 4b23246f88846c4ec73316018d1af88e Description-en: open-source port of the DOS shoot-em-up Tyrian Tyrian is an arcade-style vertical scrolling shooter. The story is set in 20,031 where you play as Trent Hawkins, a skilled fighter-pilot employed to fight Microsol and save the galaxy. . This package needs game data from the original Tyrian game, which is available as a freeware. It can be installed using game-data-packager. Package: org-mode-doc Description-md5: ef7aa3101c7c42ac8598e581fdc41baf Description-en: keep notes, maintain ToDo lists, and do project planning in emacs Org-mode is a mode for keeping notes, maintaining ToDo lists, and doing project planning with a fast and effective plain-text system. . Org-mode develops organizational tasks around NOTES files that contain information about projects as plain text. Org-mode is implemented on top of outline-mode, which makes it possible to keep the content of large files well structured. Visibility cycling and structure editing help to work with the tree. Tables are easily created with a built-in table editor. Org-mode supports ToDo items, deadlines, time stamps, and scheduling. It dynamically compiles entries into an agenda. Plain text URL-like links connect to websites, emails, Usenet messages, BBDB entries, and any files related to the projects. For printing and sharing of notes, an Org-mode file can be exported as a structured ASCII file, HTML, and LaTeX. . This is the documentation package Package: play.it-strategy Description-md5: 7e21492b80a8ea2e78e70f3502cde3aa Description-en: ./play.it collection - Strategy games play.it is a free software building native packages from installers for Windows or Linux, mainly those sold by stores focusing on DRM-free games distribution. The goal is that a game installed via ./play.it is indistinguishable from a game installed via the official repositories of your favourite distribution. . This specific collection includes only strategy games. These games rely on long-term planning. They often include military troops management, but can be more peaceful with a focus on resource gathering and logistics. Both turn-based and real-time games are included. Package: prismlauncher Description-md5: 7f9b4a97aa92ffdb5e5ed2be104d1aad Description-en: FOSS Minecraft launcher supporting multiple instances and accounts Prism Launcher is a custom launcher for Minecraft that allows users to create multiple instances and use multiple accounts. As a fork of the popular MultiMC, it focuses on user freedom, stability, & simplicity. Package: python-seqcluster-doc Description-md5: 7e4181b00560032b27cb4dc4b37a49ce Description-en: analysis of small RNA in NGS data (documentation) Seqcluster investigates small RNA sequences of all sorts in RNA sequencing data. This is especially helpful for the identification of RNA that is neither coding nor belonging to the already well-established group of miRNA, towards many tools feel constrained to. . This package provides the HTML documentation for the Python-implemented seqcluster tool. Package: python3-drf-spectacular-sidecar-nonfree Description-md5: ef1ad5680f810644da900f90c2ca7946 Description-en: Serve builds of Swagger UI and Redoc for Django REST framework (Python3) This package contains a Django app that is an optional addition to python3-djangorestframework-spectacular, but does not depend on it. It can also be used independently. . This package contains the Python 3 version. Package: python3-seqcluster Description-md5: dab0f9f2134fc17ee0bf05421b82e5dc Description-en: analysis of small RNA in NGS data Identifies small RNA sequences of all sorts in RNA sequencing data. This is especially helpful for the identification of RNA that is neither coding nor belonging to the already well-established group of miRNA, towards many tools feel constrained to. . This package provides the Python module. For executables see the package 'seqcluster'. Package: python3-unrardll Description-md5: ceaf8700f273ef788638263a3233183e Description-en: Python wrapper for the unrar shared library Python library that provides access to libunrar. See also: UnRAR dll https://www.rarlab.com/rar_add.htm Package: reform-branding Description-md5: f70350c98d91d522df996cf3077820cb Description-en: Company logo of MNT Research GmbH in multiple formats This package enhances the packages reform-tools and reform-handbook with optional logos of MNT Research. These logos are licensed under CC-BY-NC-4.0 and are thus in their own package in non-free. Install this package to receive the same experience as offered by the vanilla installation images provided by MNT Research. Package: ruby-pgplot Description-md5: cf08efc3d00267462ecffbd245d9bf82 Description-en: Ruby interface to the PGPLOT graphics library Ruby/PGPLOT is the Ruby interface to the PGPLOT graphics library. PGPLOT is a FORTRAN library to draw line/scatter/histogram plot, error bar, contour/image/vector map, etc. Supports various output devices including Postscript, PNG, X-Window, etc. Package: seqcluster Description-md5: 6c17cc468ea461a1b077d0e3bee7a08b Description-en: analysis of small RNA in NGS data Seqcluster investigates small RNA sequences of all sorts in RNA sequencing data. This is especially helpful for the identification of RNA that is neither coding nor belonging to the already well-established group of miRNA, towards many tools feel constrained to. Package: shockolate Description-md5: 8cf0cb25bf0b6d52c9dd0baf16acf149 Description-en: System Shock game engine Shockolate is a source port of System Shock, a 1994 first-person action-adventure developed by LookingGlass Technologies. The game is set inside a large, multi-level space station, in which players explore, combat enemies and solve puzzles. . Shockolate aims to preserve the original gaming experience with a few improvements, such as an OpenGL renderer and support for mods. . The original System Shock game data files are required to run Shockolate. You can install them by using the game-data-packager tool. Package: t1-xfree86-nonfree Description-md5: 9e189aed17746a862bbbdc9e442fd426 Description-en: non-free Postscript Type 1 fonts from XFree86 Collection of Postscript Type 1 fonts originally part of the XFree86 distribution, but which are licensed under terms incompatible with the Debian Free Software Guidelines, and thus cannot be distributed as part of Debian. . The fonts are: - IBM Courier - B&H Luxi Mono - B&H Luxi Sans - B&H Luxi Serif . The TrueType version of the Luxi fonts are in the separate package fonts-xfree86-nonfree. Package: treeview Description-md5: ba1871fdfc7832e4ff41cecdd4a32563 Description-en: Java re-implementation of Michael Eisen's TreeView TreeView creates a matrix-like display of expression data, known as Eisen clustering. The original implementation was a Windows program named TreeView by Michael Eisen. This TreeView package, sometimes also referred to as jTreeView, was rewritten in Java under a free license. . Java TreeView is an extensible viewer for microarray data in PCL or CDT format. Package: ttf-xfree86-nonfree Description-md5: a00f7599cbca42b2d1b7e4fab6698312 Description-en: non-free TrueType fonts from XFree86 (dummy package) This ttf-xfree86-nonfree package is transitional dummy package, it can be safely removed. Package: ttf-xfree86-nonfree-syriac Description-md5: 5f4cd2bbd56cae34f61c025ad01eb58c Description-en: non-free syriac OpenType fonts from XFree86 (dummy package) This ttf-xfree86-nonfree-syriac package is transitional dummy package, it can be safely removed. Package: xml2rfc Description-md5: c52c3120527065ba171aae95685c4c34 Description-en: XML-based formatting tool for RFCs This package provides xml2rfc, a tool which creates text, HTML, PDF, and nroff output in the format required for Internet-Drafts and RFCs. The text and nroff output is suitable for input to the RFC editor. . The DTD used by the XML documents is described in RFC 2629. Package: xsnow Description-md5: 50f83ae2081d9d64cb36576ded637c7a Description-en: brings Christmas to your desktop Xsnow is a X Window application that will snow on the desktop background. Santa and his reindeer will complete your festive-season feeling. Xsnow runs in GNOME, KDE, FVWM and desktops that are derived from those. Package: xtrs Description-md5: c54ac14c22d2401900ed00ee8a00f426 Description-en: emulator for TRS-80 Model I/III/4/4P computers xtrs is an X-based emulator for the Tandy/Radio Shack line of Zilog Z80-based microcomputers popular in the late 1970s and early 1980s. It features cassette, floppy, and hard drive emulation, timer interrupt emulation, file import and export from the host operating system, support for most of the undocumented Z80 instructions, and a built-in debugger. Real floppy drives can be used, and, if an OSS-compatible sound driver is available, application-based sound can be played and real cassettes read and written directly through the sound card or via WAVE files. Several hi-res graphics cards are emulated and, in Model 4/4P mode, mice are supported. There is also real-time clock, sound card, serial port, joystick, and CPU clock speedup emulation. . xtrs requires ROM images from the original machines. The ROMs are copyrighted by Radio Shack and are not freely licensed. (Exception: in Model 4P mode, a freely-licensed boot ROM included with this package can be used to boot a Model 4 operating system from a diskette image.) . xtrs is maintained upstream at GitHub: see . Package: znuny Description-md5: 5873eb0ef17c83935a4c095d51336c5c Description-en: flexible web-based ticketing system Znuny is a fork of the OTRS community edition, one of the most flexible web-based ticketing systems used for Customer Service, Help Desk, IT Service Management. Package: librna-perl Description-md5: 895cf06070e423e768fdaf45508091e5 Description-en: ViennaRNA perl wrappers Perl wrappers above ViennaRNA library. . The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures Package: libvmtk-dev Description-md5: 772372b2cf9ad0484215d3c141d3f02d Description-en: shared links and header files for vmtk The Vascular Modeling Toolkit is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels. . This package contains header files and shared library links. Package: libvmtk1.5 Description-md5: a4b9212e2146f917ee5c118ea209db85 Description-en: runtime libraries for vmtk The Vascular Modeling Toolkit is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels. . This package contains the shared runtime libraries. Package: python3-rna Description-md5: 310e3dd7fe72676202a1db1d473b4678 Description-en: ViennaRNA Python wrappers Python wrappers above ViennaRNA library. . The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures Package: python3-vmtk Description-md5: 0688c258864f2b532dd99bf428123873 Description-en: Python 3 interface for vmtk The Vascular Modeling Toolkit is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels. . This package provides the Python 3 interface for vmtk. Package: vienna-rna Description-md5: 134d162b5c8e2db57e17c766b7274fba Description-en: RNA sequence analysis The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures. It is developed and maintained by the group of Ivo Hofacker in Vienna. . RNA secondary structure prediction through energy minimization is the most used function in the package. It provides three kinds of dynamic programming algorithms for structure prediction: * the minimum free energy algorithm of (Zuker & Stiegler 1981) which yields a single optimal structure, * the partition function algorithm of (McCaskill 1990) which calculates base pair probabilities in the thermodynamic ensemble, and the suboptimal folding algorithm of (Wuchty et.al 1999) which generates all suboptimal structures within a given energy range of the optimal energy. . For secondary structure comparison, the package contains several measures of distance (dissimilarities) using either string alignment or tree-editing (Shapiro & Zhang 1990). Finally, is provided an algorithm to design sequences with a predefined structure (inverse folding). The RNAforester package is a tool for aligning RNA secondary structures and it's user interface integrates to those of the tools of the Vienna RNA package. Package: python3-cx-oracle Description-md5: ea1583d4bbdab3ed20ac652efb13bda1 Description-en: Python interface to Oracle Database (Python 3) cx_Oracle is a Python extension module that enables access to Oracle Database. . It conforms to the Python database API 2.0 specification with a considerable number of additions and a couple of exclusions. . You can use cx_Oracle with Oracle 11.2, 12, 18 and 19 client libraries. . This package installs the library for Python 3. Package: ugene Description-md5: 9a10717d68a69dfaff1354fa2282b503 Description-en: integrated bioinformatics toolkit Unipro UGENE is a cross-platform visual environment for DNA and protein sequence analysis. UGENE integrates the most important bioinformatics computational algorithms and provides an easy-to-use GUI for performing complex analysis of the genomic data. One of the main features of UGENE is a designer for custom bioinformatics workflows. Package: libodpic26 Description-md5: ab5d684e6cf00e24207e0ddef1bfe15f Description-en: Oracle Database Programming Interface - runtime C shared library Oracle Database Programming Interface for C (ODPI-C) is an open source library of C code that simplifies access to Oracle Database for applications written in C or C++. It is a wrapper over Oracle Call Interface (OCI) that makes applications and language interfaces easier to develop. . ODPI-C supports basic and advanced features of Oracle Database and Oracle Client. See the homepage for a list. . This package contains the C shared library needed to run programs that dynamically link to ODPI-C. Package: odpic-dev Description-md5: 49a15361421aff7972b2ab791fe2768e Description-en: Oracle Database Programming Interface - development files Oracle Database Programming Interface for C (ODPI-C) is an open source library of C code that simplifies access to Oracle Database for applications written in C or C++. It is a wrapper over Oracle Call Interface (OCI) that makes applications and language interfaces easier to develop. . ODPI-C supports basic and advanced features of Oracle Database and Oracle Client. See the homepage for a list. . This package contains the files needed to develop programs that use ODPI-C; including the headers, examples, and sample programs.