Package: arb Description-md5: 2ca2c66185345d1b949d56621a7ef415 Description-en: phylogenetic sequence analysis suite - main program ARB is a graphical suite of tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the sequence entries is structured according to phylogeny or other user-defined criteria. . The ARB project (from the Latin "arbor", a tree) is a joint initiative of the Lehrstuhl für Mikrobiologie and the LRR of the Technische Universität München in 1992. Since 2014 the ARB project is continued by the Department of Molecular Ecology http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html at the Max Planck Institute for Marine Microbiology in Bremen in cooperation with Ribocon GmbH http://www.ribocon.com . Package: arb-common Description-md5: 86aeba2447b7f1108f14f73c8e61d746 Description-en: phylogenetic sequence analysis suite - common files ARB is a graphical suite of tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the sequence entries is structured according to phylogeny or other user-defined criteria. . The ARB project (from the Latin "arbor", a tree) is a joint initiative of the Lehrstuhl für Mikrobiologie and the LRR of the Technische Universität München in 1992. Since 2014 the ARB project is continued by the Department of Molecular Ecology http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html at the Max Planck Institute for Marine Microbiology in Bremen in cooperation with Ribocon GmbH http://www.ribocon.com . . This package provides the architecture independent scripts of ARB. Package: arb-doc Description-md5: 938bcc4350a34257692df7cb34295020 Description-en: phylogenetic sequence analysis suite - documentation ARB is a graphical suite of tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the sequence entries is structured according to phylogeny or other user-defined criteria. . The ARB project (from the Latin "arbor", a tree) is a joint initiative of the Lehrstuhl für Mikrobiologie and the LRR of the Technische Universität München in 1992. Since 2014 the ARB project is continued by the Department of Molecular Ecology http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html at the Max Planck Institute for Marine Microbiology in Bremen in cooperation with Ribocon GmbH http://www.ribocon.com . . This package provides the documentation for ARB. Package: bart-cuda Description-md5: e45b2047d3b3de23995919c1dfefbcb5 Description-en: tools for computational magnetic resonance imaging The Berkeley Advanced Reconstruction Toolbox (BART) is a free and open-source image-reconstruction framework for Computational Magnetic Resonance Imaging. It consists of a programming library and a toolbox of command-line programs. The library provides common operations on multi-dimensional arrays, Fourier and wavelet transforms, as well as generic implementations of iterative optimization algorithms. The command-line tools provide direct access to basic operations on multi-dimensional arrays as well as efficient implementations of many calibration and reconstruction algorithms for parallel imaging, compressed sensing, and machine learning. . This package provides BART with CUDA support. Package: ifeffit Description-md5: 910f116c8e14fa8d361b031b45896347 Description-en: Interactive XAFS analysis program IFEFFIT is an interactive program for XAFS analysis. It combines the high-quality analysis algorithms of AUTOBK and FEFFIT with graphical display of XAFS data and general data manipulation. . IFEFFIT comes as a command-line program, but the underlying functionality is available as a programming library. The IFEFFIT library can be used from C, Fortran, Tcl, and Perl. Package: ifeffit-doc Description-md5: 23588aa725d1361238e782379bbed9bc Description-en: IFEFFIT examples and documentation This package contains all the available documentation for IFEFFIT and its component programs. Example files for EXAFS data analysis are also provided as tutorials. Package: libarb Description-md5: 100ea6653bad75c8393b30e8c5a69ea4 Description-en: phylogenetic sequence analysis suite - libraries ARB is a graphical suite of tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the sequence entries is structured according to phylogeny or other user-defined criteria. . The ARB project (from the Latin "arbor", a tree) is a joint initiative of the Lehrstuhl für Mikrobiologie and the LRR of the Technische Universität München in 1992. Since 2014 the ARB project is continued by the Department of Molecular Ecology http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html at the Max Planck Institute for Marine Microbiology in Bremen in cooperation with Ribocon GmbH http://www.ribocon.com . . This package provides the dynamic libraries which are used by ARB. Package: libarb-dev Description-md5: f0f0a9bdd3c458c4732265d1b07b6847 Description-en: phylogenetic sequence analysis suite - development files ARB is a graphical suite of tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the sequence entries is structured according to phylogeny or other user-defined criteria. . The ARB project (from the Latin "arbor", a tree) is a joint initiative of the Lehrstuhl für Mikrobiologie and the LRR of the Technische Universität München in 1992. Since 2014 the ARB project is continued by the Department of Molecular Ecology http://www.mpi-bremen.de/en/Department_of_Molecular_Ecology.html at the Max Planck Institute for Marine Microbiology in Bremen in cooperation with Ribocon GmbH http://www.ribocon.com . . This package provides headers and static libs needed to link against libARBDB. Package: libhwloc-contrib-plugins Description-md5: 8faa39a7d59c7d7004fdfd6792577295 Description-en: Hierarchical view of the machine - contrib plugins libhwloc provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures. It primarily aims at helping high-performance computing applications with gathering information about the hardware so as to exploit it accordingly and efficiently. . libhwloc provides a hierarchical view of the machine, NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various attributes such as cache and memory information. . libhwloc supports old kernels not having sysfs topology information, with knowledge of cpusets, offline cpus, and Kerrighed support . This package contains plugins to add discovery support for non-free items. This includes - CUDA support. Package: libifeffit-perl Description-md5: e6edcbfcf9214ca2748ec5d9024356e5 Description-en: Perl extensions for IFEFFIT IFEFFIT is an interactive program for XAFS analysis. It combines the high-quality analysis algorithms of AUTOBK and FEFFIT with graphical display of XAFS data and general data manipulation. . This package provides an interface to IFEFFIT from Perl. Package: matlab-jsonlab Description-md5: 2aeaa0d5e0504122421ec9a78a14a1a6 Description-en: native JSON/UBJSON/MassagePack encoder/decoder for MATLAB JSONLab is a free and open-source implementation of a JSON/UBJSON/MessagePack encoder and a decoder in the native MATLAB language. It can be used to convert a MATLAB data structure (array, struct, cell, struct array and cell array) into JSON/UBJSON formatted string, or decode a JSON/UBJSON/MessagePack file into MATLAB data. JSONLab supports both MATLAB and GNU Octave (a free MATLAB clone). JSONLab is now the official reference implementation for the JData Specification (Draft 3) - the foundation of the OpenJData Project (http://openjdata.org). . This package provides support for MATLAB. Package: python3-unrardll Description-md5: ceaf8700f273ef788638263a3233183e Description-en: Python wrapper for the unrar shared library Python library that provides access to libunrar. See also: UnRAR dll https://www.rarlab.com/rar_add.htm Package: ruby-pgplot Description-md5: cf08efc3d00267462ecffbd245d9bf82 Description-en: Ruby interface to the PGPLOT graphics library Ruby/PGPLOT is the Ruby interface to the PGPLOT graphics library. PGPLOT is a FORTRAN library to draw line/scatter/histogram plot, error bar, contour/image/vector map, etc. Supports various output devices including Postscript, PNG, X-Window, etc. Package: cufflinks Description-md5: c37740a8cd1091b60d5fda1e37d84380 Description-en: Transcript assembly, differential expression and regulation for RNA-Seq Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one. . This package provides the binary of cufflinks and associated tools, i.e. compress_gtf, cuffcompare, cuffdiff, cuffmerge, cuffnorm, cuffquant and gtf_to_sam. Package: iso2mesh-tools Description-md5: 3b89ffbe6b8b0aee8bbafebce5518870 Description-en: 3D mesh generation and repairing utilities This package contains 3D mesh generation and repairing tools that can be used independently and invoked inside iso2mesh. . These tools include cgalmesh (3D mesh generation from volumetric images), `cgalpoly` (3D mesh generation from polyhedral surfaces), `cgalsimp2` (triangular surface simplification), `meshfix` (3D surface cleaning and repairing), and `jmeshlib` (3D surface cleaning). Package: librna-perl Description-md5: 895cf06070e423e768fdaf45508091e5 Description-en: ViennaRNA perl wrappers Perl wrappers above ViennaRNA library. . The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures Package: opentyrian Description-md5: 4b23246f88846c4ec73316018d1af88e Description-en: open-source port of the DOS shoot-em-up Tyrian Tyrian is an arcade-style vertical scrolling shooter. The story is set in 20,031 where you play as Trent Hawkins, a skilled fighter-pilot employed to fight Microsol and save the galaxy. . This package needs game data from the original Tyrian game, which is available as a freeware. It can be installed using game-data-packager. Package: prismlauncher Description-md5: 7f9b4a97aa92ffdb5e5ed2be104d1aad Description-en: FOSS Minecraft launcher supporting multiple instances and accounts Prism Launcher is a custom launcher for Minecraft that allows users to create multiple instances and use multiple accounts. As a fork of the popular MultiMC, it focuses on user freedom, stability, & simplicity. Package: python3-cx-oracle Description-md5: ea1583d4bbdab3ed20ac652efb13bda1 Description-en: Python interface to Oracle Database (Python 3) cx_Oracle is a Python extension module that enables access to Oracle Database. . It conforms to the Python database API 2.0 specification with a considerable number of additions and a couple of exclusions. . You can use cx_Oracle with Oracle 11.2, 12, 18 and 19 client libraries. . This package installs the library for Python 3. Package: python3-rna Description-md5: 310e3dd7fe72676202a1db1d473b4678 Description-en: ViennaRNA Python wrappers Python wrappers above ViennaRNA library. . The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures Package: shockolate Description-md5: 8cf0cb25bf0b6d52c9dd0baf16acf149 Description-en: System Shock game engine Shockolate is a source port of System Shock, a 1994 first-person action-adventure developed by LookingGlass Technologies. The game is set inside a large, multi-level space station, in which players explore, combat enemies and solve puzzles. . Shockolate aims to preserve the original gaming experience with a few improvements, such as an OpenGL renderer and support for mods. . The original System Shock game data files are required to run Shockolate. You can install them by using the game-data-packager tool. Package: vienna-rna Description-md5: 134d162b5c8e2db57e17c766b7274fba Description-en: RNA sequence analysis The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures. It is developed and maintained by the group of Ivo Hofacker in Vienna. . RNA secondary structure prediction through energy minimization is the most used function in the package. It provides three kinds of dynamic programming algorithms for structure prediction: * the minimum free energy algorithm of (Zuker & Stiegler 1981) which yields a single optimal structure, * the partition function algorithm of (McCaskill 1990) which calculates base pair probabilities in the thermodynamic ensemble, and the suboptimal folding algorithm of (Wuchty et.al 1999) which generates all suboptimal structures within a given energy range of the optimal energy. . For secondary structure comparison, the package contains several measures of distance (dissimilarities) using either string alignment or tree-editing (Shapiro & Zhang 1990). Finally, is provided an algorithm to design sequences with a predefined structure (inverse folding). The RNAforester package is a tool for aligning RNA secondary structures and it's user interface integrates to those of the tools of the Vienna RNA package. Package: xsnow Description-md5: 50f83ae2081d9d64cb36576ded637c7a Description-en: brings Christmas to your desktop Xsnow is a X Window application that will snow on the desktop background. Santa and his reindeer will complete your festive-season feeling. Xsnow runs in GNOME, KDE, FVWM and desktops that are derived from those. Package: xtrs Description-md5: c54ac14c22d2401900ed00ee8a00f426 Description-en: emulator for TRS-80 Model I/III/4/4P computers xtrs is an X-based emulator for the Tandy/Radio Shack line of Zilog Z80-based microcomputers popular in the late 1970s and early 1980s. It features cassette, floppy, and hard drive emulation, timer interrupt emulation, file import and export from the host operating system, support for most of the undocumented Z80 instructions, and a built-in debugger. Real floppy drives can be used, and, if an OSS-compatible sound driver is available, application-based sound can be played and real cassettes read and written directly through the sound card or via WAVE files. Several hi-res graphics cards are emulated and, in Model 4/4P mode, mice are supported. There is also real-time clock, sound card, serial port, joystick, and CPU clock speedup emulation. . xtrs requires ROM images from the original machines. The ROMs are copyrighted by Radio Shack and are not freely licensed. (Exception: in Model 4P mode, a freely-licensed boot ROM included with this package can be used to boot a Model 4 operating system from a diskette image.) . xtrs is maintained upstream at GitHub: see .